Web(default: 1) --net-chop-method {cterm,20s} NetChop prediction method to use ("cterm" for C term 3.0, "20s" for 20S 3.0). C-term 3.0 is trained with publicly available MHC class I ligands and the authors believe that is performs best in predicting the boundaries of CTL epitopes. 20S is trained with in vitro degradation data. http://tools.iedb.org/main/references/

NetCTLpan: pan-specific MHC class I pathway epitope predictions

WebA key role in cell-mediated immunity is dedicated to the major histocompatibility complex (MHC) molecules that bind peptides for presentation on the cell surface. Several in silico … WebMay 27, 2014 · Looking at the length specific data, the AS model was numerically the highest performing method for 9mers, followed by NetMHCcons, the AST model, and finally the AT model. In terms of the statistical test, on this data set all three models performed significantly better than NetMHCstab and T cell propensity, but only the AS model … baie mahault

Late-differentiated effector neoantigen-specific CD8+ T cells are ...

Web1. Select method. By default, the consensus method ( NetMHCcons ) is selected but each of the three individual prediction methods can be run separately. 2. Select Allele(s). To … WebSep 2, 2016 · Therefore, if accuracy is necessary, my suggestion would be to just use NetMHCcons. It's essentially a consensus method that integrates NetMHC, … WebOct 20, 2011 · In conclusion, we have defined a method, NetMHCcons, in terms of the NetMHCpan method and its combinations with NetMHC and PickPocket based on … baie-mahault